Integrate countstates.py into statistic extraction pipeline
assemblystats.py
- New functions:
uniformMarginal,uniformMarginals - Bugfix in
plotProbs
compute_stats.py
- Integrated changes to loading and parsing functions from
labels.py - Added 'uniform state marginal' statistic extraction
- New function:
writeFilterResults - Resolves #36 (closed)
countstates.py --> correctstategraph.py
- New classes:
CorrectState,CorrectStateGraph
duplocorpus.py
- Changed
DuploCorpus.readLabels: This function now returns a binary variable indicating whether it succeeded or not
inferencepipeline.py
- Removed functions:
loadAnnotations,loadNotes
inferstate.py
- Integrated changes to loading and parsing functions from
labels.py
labels.py
- New functions:
loadNotes,loadAnnotations - Changes to
constructStateSeq,constructStateSeqs,constructActionSeq,constructActionSeqs: These functions now return a binary variable indicating whether they succeeded or not
statspipeline.py
- Removed method:
StatsPipeline.loadLabels
utils.py
- New function:
splitSeq